- Class: 3
- Architecture: 3.40:3-Layer(aba) Sandwich
- Topology: 3.40.50:Rossmann fold
- Homology: 3.40.50.1010:5'-nuclease
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1a76 | [A] | [A] | [A] | 2 | MN:MANGANESE (II) ION | |||
1a77 | [A] | [A] | [A] | 2 | MG:MAGNESIUM ION | |||
1b43 | [A2] | [A2] | [A2] | 2 | ||||
1bgx | [ABC] | [A2B] | [A2B] | 2.3 | ||||
1exn | [A] | [A] | [A] | 2.5 | MSE:SELENOMETHIONINE | |||
1mc8 | [A2] | [A2] | [A2] | 3.1 | ||||
1o4w | [A2] | [A2] | [A2] | 1.9 | MSE:SELENOMETHIONINE | |||
1rxv | [A](A) | [A](A) | [A](A) | 2.5 | ||||
1rxw | [A](AB) | [A](AB) | [A](AB) | 2 | ||||
1taq | [A] | [A] | [A] | 2.4 | BGL:2-O-OCTYL-BETA-D-GLUCOPYRANOSE ZN:ZINC ION | |||
1tau | [A](AB) | [A](AB) | [A](AB) | 3 | BGL:2-O-OCTYL-BETA-D-GLUCOPYRANOSE ZN:ZINC ION | |||
1tfr | [A] | [A] | [A] | 2.06 | MG:MAGNESIUM ION | |||
1ut5 | [A] | [A] | [A] | 2.75 | MN:MANGANESE (II) ION | |||
1ut8 | [A] | [A] | [A] | 2.75 | ZN:ZINC ION | |||
1v8o | [A4] | [A4] | [A4] | 2.8 | CL:CHLORIDE ION MSE:SELENOMETHIONINE | |||
1v8p | [A4] | [A4] | [A4] | 2.52 | CL:CHLORIDE ION | |||
1v96 | [A2] | [A2] | [A2] | 1.75 | GOL:GLYCEROL | |||
1w8i | [A2] | [A2] | [A2] | 2.1 | MSE:SELENOMETHIONINE | |||
1xo1 | [A] | [A] | [A] | 2.5 | ||||
1y82 | [A4] | [A4] | [A4] | 2.3 | MSE:SELENOMETHIONINE UNX:UNKNOWN ATOM OR ION | |||
1ye5 | [A2] | [A2] | [A2] | 2 | ||||
2bsq | [A4B4](AB) | [A4B4](AB) | [A4B4](AB) | 3 | 5IU:5-IODO-2___sq___-DEOXYURIDINE-5___sq___-MONOPHOSPHATE | |||
2dok | [A] | [A] | [A] | 1.8 | ||||
2fe1 | [A2] | [A2] | [A2] | 2.2 | CA:CALCIUM ION CL:CHLORIDE ION MN:MANGANESE (II) ION | |||
2h1c | [A2][a2] | [A2][a2] | [A2][a2] | 1.8 | ACT:ACETATE ION MG:MAGNESIUM ION SO4:SULFATE ION | |||
2h1o | [A4B4](AB) | [A4B4](AB) | [A4B4](AB) | 3 | 5IU:5-IODO-2___sq___-DEOXYURIDINE-5___sq___-MONOPHOSPHATE | |||
2hww | [A] | [A] | [A] | 1.8 | ||||
2hwx | [A] | [A] | [A] | 1.9 | ||||
2hwy | [A] | [A] | [A] | 2.75 | ||||
2ihn | [A](AB) | [A](AB) | [A](AB) | 3 | ||||
2lcq | [A] | [A] | [A] | NOTAPPLICABLE. | ZN:ZINC ION | |||
2mdt | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2qip | [A2] | [A2] | [A2] | 1.48 | EDO:1,2-ETHANEDIOL MSE:SELENOMETHIONINE | |||
2wp8 | [ABC] | [ABC] | [A2B] | 3 | CL:CHLORIDE ION GOL:GLYCEROL | |||
3dbo | [AB] | [AB] | [AB] | 1.76 | ACT:ACETATE ION BME:BETA-MERCAPTOETHANOL NA:SODIUM ION | |||
3h7i | [A] | [A] | [A] | 1.5 | SO4:SULFATE ION | |||
3h87 | [A4B4] | [A4B4] | [A4B4] | 1.49 | BME:BETA-MERCAPTOETHANOL GOL:GLYCEROL IMD:IMIDAZOLE MG:MAGNESIUM ION | |||
3h8j | [A] | [A] | [A] | 1.8 | NA:SODIUM ION SO4:SULFATE ION | |||
3h8s | [A] | [A] | [A] | 2.51 | MG:MAGNESIUM ION | |||
3h8w | [A] | [A] | [A] | 2.8 | ||||
3i8o | [A] | [A] | [A] | 2.64 | ACT:ACETATE ION CL:CHLORIDE ION FMT:FORMIC ACID MSE:SELENOMETHIONINE PEG:DI(HYDROXYETHYL)ETHER | |||
3ix7 | [A2] | [A2] | [A2] | 2.15 | ACY:ACETIC ACID MSE:SELENOMETHIONINE | |||
3ory | [A] | [A] | [A] | 2 | PO4:PHOSPHATE ION | |||
3q8k | [A](ABC) | [A](ABC) | [A](ABC) | 2.2 | K:POTASSIUM ION OH:HYDROXIDE ION SM:SAMARIUM (III) ION | |||
3q8l | [A](ABC) | [A](ABC) | [A](ABC) | 2.32 | K:POTASSIUM ION SM:SAMARIUM (III) ION SO4:SULFATE ION | |||
3q8m | [A](ABC) | [A](ABC) | [A](ABC) | 2.6 | K:POTASSIUM ION | |||
3qe9 | [A](AB) | [A](AB) | [A](AB) | 2.51 | CA:CALCIUM ION K:POTASSIUM ION | |||
3qea | [A](AB) | [A](AB) | [A](AB) | 3.1 | BA:BARIUM ION | |||
3qeb | [A](AB) | [A](AB) | [A](AB) | 3 | MN:MANGANESE (II) ION | |||
3tnd | [A4B4] | [A4B4] | [A4B4] | 2.7 | NA:SODIUM ION SO4:SULFATE ION | |||
3zd8 | [A] | [A] | [A] | 2 | K:POTASSIUM ION | |||
3zd9 | [A] | [A] | [A] | 2 | K:POTASSIUM ION | |||
3zda | [A](AB) | [A](AB) | [A](AB) | 1.5 | K:POTASSIUM ION MG:MAGNESIUM ION PIV:PIVALIC ACID PO4:PHOSPHATE ION | |||
3zdb | [A2](A2) | [A2](A2) | [A2](A2) | 1.47 | ACT:ACETATE ION K:POTASSIUM ION MG:MAGNESIUM ION | |||
3zdc | [A](A) | [A](A) | [A](A) | 1.53 | ACT:ACETATE ION CA:CALCIUM ION K:POTASSIUM ION | |||
3zdd | [A2](A2) | [A2](A2) | [A2](A2) | 1.5 | EDO:1,2-ETHANEDIOL IPA:ISOPROPYL ALCOHOL K:POTASSIUM ION | |||
3zde | [A] | [A] | [A] | 2.45 | ||||
3zvk | [A4B4](AB) | [A4B4](AB) | [A4B4](AB) | 2.5 | MES:2-(N-MORPHOLINO)-ETHANESULFONIC ACID | |||
4chg | [A2B2] | [A2B2] | [A2B2] | 2.1 | MG:MAGNESIUM ION MN:MANGANESE (II) ION MSE:SELENOMETHIONINE | |||
4mj7 | [A2] | [A2] | [A2] | 2.51 | ZN:ZINC ION | |||
4xgq | [A2B2] | [A2B2] | [A2B2] | 2.7 | MG:MAGNESIUM ION | |||
4xgr | [A2B2] | [A2B2] | [A2B2] | 2.7 | MG:MAGNESIUM ION MSE:SELENOMETHIONINE | |||
5ecd | [A2] | [A2] | [A2] | 1.75 | EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | |||
5ecw | [A2] | [A2] | [A2] | 1.94 | ||||
5ecy | [A8] | [A8] | [A8] | 2 | ||||
5ed0 | [A2] | [A2] | [A2] | 2.1 | ||||
5h4g | [A2] | [A2] | [A2] | 1.77 | ZN:ZINC ION | |||
5h4h | [A2] | [A2] | [A2] | 2.23 | CD:CADMIUM ION | |||
5hml | [A] | [A] | [A] | 1.48 | B3P:2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL CL:CHLORIDE ION EDO:1,2-ETHANEDIOL IOD:IODIDE ION MG:MAGNESIUM ION | |||
5hmm | [A] | [A] | [A] | 1.5 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL MG:MAGNESIUM ION | |||
5hnk | [A](A2) | [A](A2) | [A](A2) | 2.22 | GOL:GLYCEROL K:POTASSIUM ION MG:MAGNESIUM ION | |||
5hp4 | [A](A3) | [A](A3) | [A](A3) | 1.86 | CA:CALCIUM ION GOL:GLYCEROL K:POTASSIUM ION NA:SODIUM ION | |||
5k8j | [A4B4] | [A4B4] | [A4B4] | 1.6 | GOL:GLYCEROL MSE:SELENOMETHIONINE | |||
5k97 | [A](ABCD) | [A](ABCD) | [A](ABCD) | 2.1 | EDO:1,2-ETHANEDIOL K:POTASSIUM ION SM:SAMARIUM (III) ION | |||
5kse | [A](ABC) | [A](ABC) | [A](ABC) | 2.11 | K:POTASSIUM ION SM:SAMARIUM (III) ION | |||
5l6l | [A4B4](AB) | [A4B4](AB) | [A4B4](AB) | 2.7 | MSE:SELENOMETHIONINE | |||
5l6m | [A4B4] | [A4B4] | [A4B4] | 1.9 | GOL:GLYCEROL MLI:MALONATE ION | |||
5sv2 | [A2] | [A2] | [A2] | 1.31 | ||||
5um9 | [A](ABC) | [A](ABC) | [A](ABC) | 2.81 | K:POTASSIUM ION SM:SAMARIUM (III) ION | |||
5uzv | [A](AB) | [A](AB) | [A](AB) | 2.45 | NA:SODIUM ION | |||
5v04 | [A](AB) | [A](AB) | [A](AB) | 2.65 | NA:SODIUM ION | |||
5v05 | [A](AB) | [A](AB) | [A](AB) | 2.9 | MN:MANGANESE (II) ION NA:SODIUM ION | |||
5v06 | [A](AB) | [A](AB) | [A](AB) | 2.75 | MN:MANGANESE (II) ION NA:SODIUM ION | |||
5v07 | [A](AB) | [A](AB) | [A](AB) | 2.15 | MN:MANGANESE (II) ION NA:SODIUM ION | |||
5v08 | [A](AB) | [A](AB) | [A](AB) | 2.81 | MG:MAGNESIUM ION NA:SODIUM ION | |||
5v09 | [A](AB) | [A](AB) | [A](AB) | 2.75 | MN:MANGANESE (II) ION NA:SODIUM ION | |||
5v0a | [A](AB) | [A](AB) | [A](AB) | 2.38 | DA:2___sq___-DEOXYADENOSINE-5___sq___-MONOPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION | |||
5v0b | [A](AB) | [A](AB) | [A](AB) | 2.63 | MN:MANGANESE (II) ION NA:SODIUM ION | |||
5v0c | [A](AB) | [A](AB) | [A](AB) | 2.58 | NA:SODIUM ION | |||
5v0d | [A](ABC) | [A](ABC) | [A](ABC) | 2.63 | MG:MAGNESIUM ION NA:SODIUM ION | |||
5v0e | [A](AB) | [A](AB) | [A](AB) | 2.74 | NA:SODIUM ION | |||
6nkl | [A2B2] | [A2B2] | [A2B2] | 2.2 |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA